STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160244TACC_C domain-containing protein. (498 aa)    
Predicted Functional Partners:
ckap5
Cytoskeleton associated protein 5.
    
 
 0.620
LOC101163926
TACC_C domain-containing protein.
    
 
0.551
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.431
Tacc3
TACC_C domain-containing protein.
  
 
 
0.416
cep120
Centrosomal protein 120.
    
 0.409
rasl11b
RAS-like, family 11, member B.
    
 0.403
bard1
BRCA1 associated RING domain 1.
    
 0.403
plk2
Serine/threonine-protein kinase PLK.
   
 0.400
plk4
Polo-like kinase 4 (Drosophila).
   
 0.400
plk3
Serine/threonine-protein kinase PLK.
   
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.