STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163518Neurotrophin receptor associated death domain. (395 aa)    
Predicted Functional Partners:
LOC101166088
Nerve growth factor receptor b.
  
  
 
0.908
LOC101164147
Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.
     
  0.900
LOC101157368
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
     
  0.900
fgf19
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
  0.650
fgf4
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
  0.650
fgf3
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
  0.650
Fgf1
Multifunctional fusion protein; Plays an important role in the regulation of cell survival, cell division, angiogenesis, cell differentiation and cell migration. Functions as potent mitogen in vitro. Acts as a ligand for FGFR1 and integrins. Binds to FGFR1 in the presence of heparin leading to FGFR1 dimerization and activation via sequential autophosphorylation on tyrosine residues which act as docking sites for interacting proteins, leading to the activation of several signaling cascades. Binds to integrins. Its binding to integrins and subsequent ternary complex formation with integr [...]
     
  0.650
LOC101166137
EGF-like domain-containing protein.
     
  0.650
vegfc
PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.
     
  0.650
fgf7
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
  0.650
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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