STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171328Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (506 aa)    
Predicted Functional Partners:
aco2
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
  
 0.994
aco1
Aconitase 1, soluble; Belongs to the aconitase/IPM isomerase family.
  
 0.991
LOC101160253
Oxoglutarate (alpha-ketoglutarate) dehydrogenase b (lipoamide).
   
 0.984
OGDH
Oxoglutarate dehydrogenase.
   
 0.984
H2MXI0_ORYLA
Isocitrate dehydrogenase (NAD(+)) 3 alpha.
  
 0.983
idh3b
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.978
idh3g
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.978
LOC101156895
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.978
LOC101156855
Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.968
cs
Citrate synthase; Belongs to the citrate synthase family.
  
 0.949
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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