STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdlim3PDZ and LIM domain 3a. (348 aa)    
Predicted Functional Partners:
cntfa
Uncharacterized protein.
      
 0.813
ing2
Inhibitor of growth protein.
   
  
 0.790
LOC101172084
MICAL like 1b, duplicate 2.
   
 0.649
ehbp1
EH domain binding protein 1.
   
 0.649
LOC101157163
Uncharacterized protein.
   
 0.649
LOC101157556
Uncharacterized protein.
   
 0.649
LOC101173151
Calponin-homology (CH) domain-containing protein.
   
 
 0.581
LOC101166813
Smoothelin a.
   
 
 0.581
smtnl1
Smoothelin-like 1.
   
 
 0.579
LOC101169098
ADP-ribosylation factor-like 8A; Belongs to the small GTPase superfamily. Arf family.
    
 0.577
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.