STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LW44_ORYLARNA binding motif protein 12B. (648 aa)    
Predicted Functional Partners:
ylpm1
YLP motif containing 1.
   
  
 0.721
pwwp2b
PWWP domain containing 2B.
      
 0.708
asb12
Ankyrin repeat and SOCS box-containing 12b.
    
 
 0.697
wac
WW domain containing adaptor with coiled-coil a.
    
   0.674
LOC101169236
WW domain-containing protein.
    
   0.674
rlim
Ring finger protein, LIM domain interacting.
      
 0.608
ADK
Adenosine kinase.
    
   0.555
LOC101173404
Adenosine kinase a.
    
   0.555
etf1
Eukaryotic translation termination factor 1b.
   
 
 0.529
dazap1
DAZ associated protein 1.
   
 
 0.516
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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