STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LW44_ORYLARNA binding motif protein 12B. (648 aa)    
Predicted Functional Partners:
rlim
Ring finger protein, LIM domain interacting.
   
  
 0.570
pwwp2b
PWWP domain containing 2B.
      
 0.559
ylpm1
YLP motif containing 1.
      
 0.559
asb12
Ankyrin repeat and SOCS box-containing 12b.
      
 0.558
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
      
 0.535
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.507
rad23a
RAD23 homolog A, nucleotide excision repair protein a.
    
 0.507
znf292
Zinc finger protein 292a.
  
   0.432
etf1
Eukaryotic translation termination factor 1b.
   
  
 0.430
qser1
Glutamine and serine rich 1.
   
  
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.