STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf710Zinc finger protein 710a. (688 aa)    
Predicted Functional Partners:
rps6kl1
Ribosomal protein S6 kinase-like 1.
    
 
 0.478
gtf3c3
General transcription factor IIIC, polypeptide 3.
    
 0.446
LOC100049520
POU domain protein.
    
 0.421
prrx1
Paired related homeobox 1a.
   
 
 0.414
pold1
DNA polymerase.
   
 
 0.406
naa35
N(alpha)-acetyltransferase 35, NatC auxiliary subunit.
   
  
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.