STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163354Stathmin; Belongs to the stathmin family. (180 aa)    
Predicted Functional Partners:
fosl1
FOS-like antigen 1a.
    
 0.703
agap3
ArfGAP with GTPase domain, ankyrin repeat and PH domain 3.
    
 0.692
LOC101168288
Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
    
 0.684
LOC101165386
Solute carrier family 32 member 1.
   
 
 0.676
LOC101158221
Glutamate receptor, ionotropic, AMPA 3a.
   
  
 0.673
baz2a
Bromodomain adjacent to zinc finger domain, 2A.
      
 0.671
LOC101175500
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
   
 
 0.640
gng3
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
  
 0.634
Nek1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.594
tshz3
Teashirt zinc finger homeobox 3b.
      
 0.590
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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