STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163354Stathmin; Belongs to the stathmin family. (180 aa)    
Predicted Functional Partners:
tshz3
Teashirt zinc finger homeobox 3b.
      
 0.647
LOC101165386
Solute carrier family 32 member 1.
   
  
 0.589
LOC101175500
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
    
 0.574
nell2
Neural EGFL like 2a.
   
 0.571
ube2c
Ubiquitin-conjugating enzyme E2C; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.557
ubqln4
Ubiquilin 4.
    
 0.545
gng3
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 
 0.531
psma4
Proteasome subunit alpha type.
    
 0.528
Nek1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 
 0.512
NSG1
Neuronal vesicle trafficking associated 1.
   
  
 0.497
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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