Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LW70_ORYLAVasorin b. (747 aa)    
Predicted Functional Partners:
traf7
TNF receptor-associated factor 7.
    
 0.710
polr3h
Polymerase (RNA) III (DNA directed) polypeptide H.
      
 0.700
islr2
Immunoglobulin superfamily containing leucine-rich repeat 2.
   
 
 0.622
LOC101174920
Potassium channel tetramerization domain containing 13.
     
 0.613
ntng1
Netrin g1a.
   
 0.557
LOC105357770
Vav 3 guanine nucleotide exchange factor b.
   
 0.557
nrde2
NRDE-2, necessary for RNA interference, domain containing.
    
 
 0.544
neto1
Neuropilin (NRP) and tolloid (TLL)-like 1, like.
   
  
 0.506
LOC101168898
Neuropilin (NRP) and tolloid (TLL)-like 1.
   
  
 0.506
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
      
 0.500
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.