NAV1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NAV1

Neuron navigator 1. (1555 aa)

Predicted Functional Partners:

mapre1

0.715

iqce

0.629

ccnb2

0.614

ccnb1

0.614

LOC101162061

0.614

cpn1

0.540

htr6

0.509

LOC101171885

0.492

emb

0.429

scn2b

0.426

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101162061	NAV1	ENSORLP00000017732	ENSORLP00000010365	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	Neuron navigator 1.	0.614
LOC101162061	ccnb1	ENSORLP00000017732	ENSORLP00000017132	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	G2/mitotic-specific cyclin-B1; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	0.900
LOC101162061	ccnb2	ENSORLP00000017732	ENSORLP00000000759	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	G2/mitotic-specific cyclin-B2; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	0.910
LOC101171885	NAV1	ENSORLP00000023762	ENSORLP00000010365	Interleukin 22 receptor, alpha 2.	Neuron navigator 1.	0.492
LOC101171885	iqce	ENSORLP00000023762	ENSORLP00000012069	Interleukin 22 receptor, alpha 2.	Uncharacterized protein.	0.493
NAV1	LOC101162061	ENSORLP00000010365	ENSORLP00000017732	Neuron navigator 1.	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	0.614
NAV1	LOC101171885	ENSORLP00000010365	ENSORLP00000023762	Neuron navigator 1.	Interleukin 22 receptor, alpha 2.	0.492
NAV1	ccnb1	ENSORLP00000010365	ENSORLP00000017132	Neuron navigator 1.	G2/mitotic-specific cyclin-B1; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	0.614
NAV1	ccnb2	ENSORLP00000010365	ENSORLP00000000759	Neuron navigator 1.	G2/mitotic-specific cyclin-B2; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	0.614
NAV1	cpn1	ENSORLP00000010365	ENSORLP00000005932	Neuron navigator 1.	Carboxypeptidase N, polypeptide 1.	0.540
NAV1	emb	ENSORLP00000010365	ENSORLP00000000380	Neuron navigator 1.	Embigin.	0.429
NAV1	htr6	ENSORLP00000010365	ENSORLP00000026578	Neuron navigator 1.	5-hydroxytryptamine (serotonin) receptor 6; Belongs to the G-protein coupled receptor 1 family.	0.509
NAV1	iqce	ENSORLP00000010365	ENSORLP00000012069	Neuron navigator 1.	Uncharacterized protein.	0.629
NAV1	mapre1	ENSORLP00000010365	ENSORLP00000025086	Neuron navigator 1.	Microtubule-associated protein, RP/EB family, member 1b.	0.715
NAV1	scn2b	ENSORLP00000010365	ENSORLP00000037941	Neuron navigator 1.	Sodium channel, voltage-gated, type II, beta.	0.426
ccnb1	LOC101162061	ENSORLP00000017132	ENSORLP00000017732	G2/mitotic-specific cyclin-B1; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	0.900
ccnb1	NAV1	ENSORLP00000017132	ENSORLP00000010365	G2/mitotic-specific cyclin-B1; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	Neuron navigator 1.	0.614
ccnb1	ccnb2	ENSORLP00000017132	ENSORLP00000000759	G2/mitotic-specific cyclin-B1; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	G2/mitotic-specific cyclin-B2; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	0.931
ccnb2	LOC101162061	ENSORLP00000000759	ENSORLP00000017732	G2/mitotic-specific cyclin-B2; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	0.910
ccnb2	NAV1	ENSORLP00000000759	ENSORLP00000010365	G2/mitotic-specific cyclin-B2; Essential for the control of the cell cycle at the G2/M (mitosis) transition; Belongs to the cyclin family. Cyclin AB subfamily.	Neuron navigator 1.	0.614