STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156102CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (597 aa)    
Predicted Functional Partners:
nudt2
Nudix (nucleoside diphosphate linked moiety X)-type motif 2.
  
 
 0.947
nme3
Nucleoside diphosphate kinase.
  
 
 0.947
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
  
 
 0.947
LOC101161287
NDK domain-containing protein; Belongs to the NDK family.
  
 
 0.947
nme6
Nucleoside diphosphate kinase.
  
 
 0.947
Ak9
Uncharacterized protein.
  
 
 0.947
LOC101175406
NME/NM23 nucleoside diphosphate kinase 4; Belongs to the NDK family.
  
 
 0.947
entpd1
Ectonucleoside triphosphate diphosphohydrolase 1; Belongs to the GDA1/CD39 NTPase family.
     
 0.931
LOC101171013
Uncharacterized protein.
     
 0.905
LOC101155077
Ectonucleotide pyrophosphatase/phosphodiesterase 1.
     
 0.905
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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