STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160926Myosin IHb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1046 aa)    
Predicted Functional Partners:
LOC101159762
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 0.531
LOC101167616
Usher syndrome 1C.
   
 0.477
ENSORLP00000031955
Uncharacterized protein.
 
 
    0.463
LOC101156094
Whirlin b.
    
 0.435
whrn
Whirlin a.
    
 0.435
LOC101169538
Usher syndrome 1Ga (autosomal recessive).
   
 0.401
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.401
LOC101174708
Usher syndrome 1Gb (autosomal recessive).
   
 0.401
phox2b
Paired like homeobox 2Bb.
   
  
 0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.