STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zc4h2Zinc finger, C4H2 domain containing. (224 aa)    
Predicted Functional Partners:
acot9
Acyl-CoA thioesterase 9, tandem duplicate 2.
    
   0.877
LOC101168937
Ring finger protein 220b.
    
 
 0.874
RNF220
Uncharacterized protein.
    
 
 0.874
LOC101168073
Ring finger protein 220a.
    
 
 0.874
ighmbp2
Immunoglobulin mu DNA binding protein 2.
      
 0.661
hibch
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.
    
   0.631
acot11
Acyl-coenzyme A thioesterase 11.
    
   0.612
acot7
Acyl-CoA thioesterase 7.
    
   0.612
LOC101159853
Uncharacterized protein.
    
   0.612
c5h12orf10
Melanocyte proliferating gene 1.
    
   0.607
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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