Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ptf1aPancreas associated transcription factor 1a. (268 aa)    
Predicted Functional Partners:
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 0.900
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
   
 0.890
nkx6-1
NK6 homeobox 1.
      
 0.793
foxn4
Forkhead box N4.
    
 0.769
pdx1
Pancreatic and duodenal homeobox 1.
    
 
 0.733
mnx1
Motor neuron and pancreas homeobox 1.
    
 
 0.718
hnf1b
HNF1 homeobox Ba.
     
 0.713
hnf1a
HNF1 homeobox a.
     
 0.686
LOC101165737
Elastase 3 like; Belongs to the peptidase S1 family.
   
  
 0.614
LOC101155154
Glucagon b.
      
 0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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