LOC101174684 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101174684

Solute carrier organic anion transporter family member. (701 aa)

Predicted Functional Partners:

LOC101173674

0.903

SLCO1C1

0.901

slc16a10

0.803

dio2

0.682

LOC101174688

0.660

LOC101174678

0.574

abcf1

0.531

thrb

0.498

recql

0.464

LOC101167294

0.462

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101167294	LOC101174684	ENSORLP00000027799	ENSORLP00000010386	Uncharacterized protein.	Solute carrier organic anion transporter family member.	0.462
LOC101167294	SLCO1C1	ENSORLP00000027799	ENSORLP00000005628	Uncharacterized protein.	Solute carrier organic anion transporter family member.	0.462
LOC101167294	dio2	ENSORLP00000027799	ENSORLP00000013567	Uncharacterized protein.	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	0.687
LOC101167294	thrb	ENSORLP00000027799	ENSORLP00000033543	Uncharacterized protein.	Thyroid hormone receptor beta.	0.908
LOC101173674	LOC101174678	ENSORLP00000010971	ENSORLP00000029246	Solute carrier organic anion transporter family member.	Uncharacterized protein.	0.574
LOC101173674	LOC101174684	ENSORLP00000010971	ENSORLP00000010386	Solute carrier organic anion transporter family member.	Solute carrier organic anion transporter family member.	0.903
LOC101173674	SLCO1C1	ENSORLP00000010971	ENSORLP00000005628	Solute carrier organic anion transporter family member.	Solute carrier organic anion transporter family member.	0.903
LOC101173674	abcf1	ENSORLP00000010971	ENSORLP00000013309	Solute carrier organic anion transporter family member.	ATP-binding cassette, sub-family F (GCN20), member 1.	0.531
LOC101173674	recql	ENSORLP00000010971	ENSORLP00000041438	Solute carrier organic anion transporter family member.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.464
LOC101173674	slc16a10	ENSORLP00000010971	ENSORLP00000019008	Solute carrier organic anion transporter family member.	Solute carrier family 16 member 10.	0.574
LOC101174678	LOC101173674	ENSORLP00000029246	ENSORLP00000010971	Uncharacterized protein.	Solute carrier organic anion transporter family member.	0.574
LOC101174678	LOC101174684	ENSORLP00000029246	ENSORLP00000010386	Uncharacterized protein.	Solute carrier organic anion transporter family member.	0.574
LOC101174678	SLCO1C1	ENSORLP00000029246	ENSORLP00000005628	Uncharacterized protein.	Solute carrier organic anion transporter family member.	0.574
LOC101174678	dio2	ENSORLP00000029246	ENSORLP00000013567	Uncharacterized protein.	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	0.538
LOC101174678	slc16a10	ENSORLP00000029246	ENSORLP00000019008	Uncharacterized protein.	Solute carrier family 16 member 10.	0.903
LOC101174684	LOC101167294	ENSORLP00000010386	ENSORLP00000027799	Solute carrier organic anion transporter family member.	Uncharacterized protein.	0.462
LOC101174684	LOC101173674	ENSORLP00000010386	ENSORLP00000010971	Solute carrier organic anion transporter family member.	Solute carrier organic anion transporter family member.	0.903
LOC101174684	LOC101174678	ENSORLP00000010386	ENSORLP00000029246	Solute carrier organic anion transporter family member.	Uncharacterized protein.	0.574
LOC101174684	LOC101174688	ENSORLP00000010386	ENSORLP00000032151	Solute carrier organic anion transporter family member.	Junctional adhesion molecule 3b.	0.660
LOC101174684	SLCO1C1	ENSORLP00000010386	ENSORLP00000005628	Solute carrier organic anion transporter family member.	Solute carrier organic anion transporter family member.	0.901