Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
H2LWA8_ORYLAUtp12 domain-containing protein. (211 aa)    
Predicted Functional Partners:
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.994
wdr36
WD repeat domain 36.
   
 0.994
tbl3
Transducin (beta)-like 3.
   
 0.994
LOC101167684
PWP2 small subunit processome component.
   
 0.988
tefm
UTP6 small subunit processome component.
   
 0.988
utp4
UTP4 small subunit processome component.
   
 0.984
wdr75
WD repeat domain 75.
   
 0.980
utp15
UTP15 small subunit processome component.
   
 0.978
mtrex
Uncharacterized protein.
   
 0.978
wdr43
WD repeat domain 43.
   
 0.978
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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