STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asb12Ankyrin repeat and SOCS box-containing 12b. (308 aa)    
Predicted Functional Partners:
asb10
Ankyrin repeat and SOCS box containing 10.
  
 
 0.646
commd8
COMM domain containing 8.
   
  0.646
commd1
Copper metabolism (Murr1) domain containing 1.
    
  0.637
asb6
Ankyrin repeat and SOCS box containing 6.
  
  
 0.635
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.635
commd4
COMM domain containing 4.
    
 0.633
rnf7
Ring finger protein 7.
    
 0.620
commd2
COMM domain containing 2.
    
  0.619
commd9
COMM domain containing 9.
    
  0.619
LOC101158778
COMM domain containing 5.
    
  0.612
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.