STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asb12Ankyrin repeat and SOCS box-containing 12b. (308 aa)    
Predicted Functional Partners:
asb10
Ankyrin repeat and SOCS box containing 10.
  
 
 0.728
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.722
pwwp2b
PWWP domain containing 2B.
      
 0.710
H2LW44_ORYLA
RNA binding motif protein 12B.
    
 
 0.697
commd9
COMM domain containing 9.
    
  0.694
LOC101158778
COMM domain containing 5.
    
  0.692
rlim
Ring finger protein, LIM domain interacting.
    
 
 0.688
commd8
COMM domain containing 8.
   
  0.668
commd6
COMM domain containing 6.
    
  0.655
commd7
COMM domain containing 7.
    
  0.654
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.