STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cutcCutC copper transporter homolog (E. coli). (251 aa)    
Predicted Functional Partners:
LOC101163376
PPC domain-containing protein.
      
 0.663
h6pd
Hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase).
  
  
 0.662
ybey
YbeY metalloendoribonuclease.
      
 0.653
Rad51c
RAD51 paralog C.
      
 0.647
ccs
Copper chaperone for superoxide dismutase.
     
 0.644
atox1
Antioxidant 1 copper chaperone.
      
 0.636
phf23
PHD finger protein 23b.
      
 0.631
SHC3
SHC adaptor protein 3.
      
 0.589
slc30a9
Solute carrier family 30 member 9.
  
  
 0.574
LOC101173617
Malate synthase-like.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.