STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bcap29Uncharacterized protein. (238 aa)    
Predicted Functional Partners:
dus4l
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
 
    
 0.963
casp8
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.909
COG5
Component of oligomeric golgi complex 5.
      
 0.834
prkar2b
Protein kinase cAMP-dependent type II regulatory subunit beta.
   
  
 0.831
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
   
 0.819
LOC101174096
VAMP (vesicle-associated membrane protein)-associated protein B and C.
   
 0.819
LOC100125536
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.795
VAPB
VAMP associated protein B and C.
   
 0.787
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.763
pgrmc1
Progestin receptor membrane component 1; Belongs to the cytochrome b5 family.
   
 0.758
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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