Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OTOP1Otopetrin 1. (579 aa)    
Predicted Functional Partners:
Oc90
PA2c domain-containing protein.
      
 0.848
otol1
Otolin 1b.
      
 0.755
tecta
Tectorin alpha.
      
 0.705
LOC101158493
Otolith matrix protein.
      
 0.703
tmem128
Transmembrane protein 107.
 
    
 0.698
casr
Calcium-sensing receptor.
      
 0.619
armc9
Armadillo repeat containing 9.
      
 0.582
slc30a4
Solute carrier family 30 member 4.
   
  
 0.577
LOC101167081
NADPH oxidase organizer 1b.
      
 0.544
rftn2
Raftlin family member 2.
      
 0.535
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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