STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167135Iron-sulfur cluster assembly enzyme b; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins. (165 aa)    
Predicted Functional Partners:
scly
Selenocysteine lyase.
 
 0.998
MOCOS
Molybdenum cofactor sulfurase; Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.
  
 0.998
ENSORLP00000039626
Frataxin.
    
 0.969
lyrm4
Si:ch211-152c8.4; Belongs to the complex I LYR family.
    
 0.962
fdx2
Ferredoxin 2.
 
 0.897
fdx1
2Fe-2S ferredoxin-type domain-containing protein.
  
 0.877
isca2
Iron-sulfur cluster assembly 2.
  
  
 0.869
isca1
Iron-sulfur cluster assembly 1.
  
  
 0.869
hspa9
Heat shock protein 9; Belongs to the heat shock protein 70 family.
  
 
 0.838
LOC101170349
NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae).
  
 
 0.691
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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