cpa6 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cpa6

Carboxypeptidase A6. (480 aa)

Predicted Functional Partners:

cpn1

0.701

agt

0.652

cpe

0.551

c5

0.518

sspn

0.498

LOC101157195

0.464

ENSORLP00000032842

0.424

serpinf2

0.408

LOC101170246

0.404

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000032842	cpa6	ENSORLP00000032842	ENSORLP00000010431	Carboxypeptidase Z.	Carboxypeptidase A6.	0.424
LOC101157195	agt	ENSORLP00000035613	ENSORLP00000006991	Neurotensin.	Angiotensinogen; Belongs to the serpin family.	0.562
LOC101157195	cpa6	ENSORLP00000035613	ENSORLP00000010431	Neurotensin.	Carboxypeptidase A6.	0.464
LOC101170246	agt	ENSORLP00000033975	ENSORLP00000006991	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Angiotensinogen; Belongs to the serpin family.	0.778
LOC101170246	c5	ENSORLP00000033975	ENSORLP00000021960	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Uncharacterized protein.	0.980
LOC101170246	cpa6	ENSORLP00000033975	ENSORLP00000010431	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Carboxypeptidase A6.	0.404
LOC101170246	serpinf2	ENSORLP00000033975	ENSORLP00000006091	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.896
agt	LOC101157195	ENSORLP00000006991	ENSORLP00000035613	Angiotensinogen; Belongs to the serpin family.	Neurotensin.	0.562
agt	LOC101170246	ENSORLP00000006991	ENSORLP00000033975	Angiotensinogen; Belongs to the serpin family.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.778
agt	c5	ENSORLP00000006991	ENSORLP00000021960	Angiotensinogen; Belongs to the serpin family.	Uncharacterized protein.	0.547
agt	cpa6	ENSORLP00000006991	ENSORLP00000010431	Angiotensinogen; Belongs to the serpin family.	Carboxypeptidase A6.	0.652
agt	serpinf2	ENSORLP00000006991	ENSORLP00000006091	Angiotensinogen; Belongs to the serpin family.	SERPIN domain-containing protein; Belongs to the serpin family.	0.677
c5	LOC101170246	ENSORLP00000021960	ENSORLP00000033975	Uncharacterized protein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.980
c5	agt	ENSORLP00000021960	ENSORLP00000006991	Uncharacterized protein.	Angiotensinogen; Belongs to the serpin family.	0.547
c5	cpa6	ENSORLP00000021960	ENSORLP00000010431	Uncharacterized protein.	Carboxypeptidase A6.	0.518
c5	cpn1	ENSORLP00000021960	ENSORLP00000005932	Uncharacterized protein.	Carboxypeptidase N, polypeptide 1.	0.823
c5	serpinf2	ENSORLP00000021960	ENSORLP00000006091	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.553
cpa6	ENSORLP00000032842	ENSORLP00000010431	ENSORLP00000032842	Carboxypeptidase A6.	Carboxypeptidase Z.	0.424
cpa6	LOC101157195	ENSORLP00000010431	ENSORLP00000035613	Carboxypeptidase A6.	Neurotensin.	0.464
cpa6	LOC101170246	ENSORLP00000010431	ENSORLP00000033975	Carboxypeptidase A6.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.404