STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (809 aa)    
Predicted Functional Partners:
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
  0.992
bud31
BUD31 homolog.
    
 
 0.982
DHX15
Uncharacterized protein.
   
 0.969
LOC101166992
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 0.969
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.968
xab2
XPA binding protein 2.
   
 0.966
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.957
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 
 0.945
prpf8
Pre-mRNA processing factor 8.
    
 
 0.945
WDR25
WD repeat domain 25.
   
 0.930
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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