STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itga8Integrin, alpha 8; Belongs to the integrin alpha chain family. (1055 aa)    
Predicted Functional Partners:
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.987
itgb3
Integrin beta; Belongs to the integrin beta chain family.
   
 0.987
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.984
LOC101168465
Integrin beta; Belongs to the integrin beta chain family.
   
 0.983
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.978
LOC101154978
Integrin beta; Belongs to the integrin beta chain family.
   
 0.977
LOC101157076
Vitronectin b.
   
 0.967
LOC101170202
Vitronectin a.
   
 0.967
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.965
fn1
Fibronectin-1.
    
 0.961
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.