Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rab39bUncharacterized protein. (213 aa)    
Predicted Functional Partners:
sqstm1
Sequestosome 1.
     
  0.900
wdr41
WD repeat domain 41.
    
 0.742
LOC101165127
UDENN FLCN/SMCR8-type domain-containing protein.
    
 0.695
smcr8
Smith-Magenis syndrome chromosome region, candidate 8a.
    
 0.695
c9orf72
Zgc:100846.
    
  0.657
LOC101174675
Transmembrane protein 230b.
      
 0.589
LOC101166728
Transmembrane protein 230a.
      
 0.589
H2M6E4_ORYLA
Uncharacterized protein.
    
 0.516
LOC101165932
Intersectin 2a.
    
 0.516
ENSORLP00000034742
Uncharacterized protein.
    
 0.516
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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