Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vps53VPS53 subunit of GARP complex. (789 aa)    
Predicted Functional Partners:
vps52
VPS52 subunit of GARP complex.
   
 0.999
vps51
VPS51 subunit of GARP complex.
   
 0.999
vps54
VPS54 subunit of GARP complex.
   
 0.999
eipr1
EARP complex and GARP complex interacting protein 1.
    
 
 0.990
vps50
VPS50 EARP/GARPII complex subunit.
   
 
 0.989
cog4
Component of oligomeric golgi complex 4.
   
 
 0.955
cog8
Component of oligomeric golgi complex 8.
   
 
 0.932
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.888
cog1
Component of oligomeric golgi complex 1.
     
 0.883
tmf1
TATA element modulatory factor 1.
     
 0.882
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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