STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps53VPS53 subunit of GARP complex. (789 aa)    
Predicted Functional Partners:
vps51
VPS51 subunit of GARP complex.
    
 0.999
vps54
VPS54 subunit of GARP complex.
   
 0.996
vps52
VPS52 subunit of GARP complex.
   
 0.993
vps50
VPS50 EARP/GARPII complex subunit.
    
 
 0.983
cog8
Component of oligomeric golgi complex 8.
   
 
 0.889
cog3
Component of oligomeric golgi complex 3.
   
 
 0.884
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.881
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.881
eipr1
EARP complex and GARP complex interacting protein 1.
    
 
 0.866
cog2
Component of oligomeric golgi complex 2.
     
 0.859
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.