trap1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

trap1

TNF receptor-associated protein 1. (715 aa)

Predicted Functional Partners:

hspa9

0.980

hsp90b1

0.958

stip1

0.932

sf3a2

0.908

hspd1

0.879

sugt1

0.864

ppp5c

0.861

gfm1

0.839

ptges3

0.838

LOC101161606

0.838

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101161606	hsp90b1	ENSORLP00000030055	ENSORLP00000005467	Prostaglandin E synthase 3a (cytosolic).	Heat shock protein 90, beta (grp94), member 1.	0.714
LOC101161606	hspa9	ENSORLP00000030055	ENSORLP00000013340	Prostaglandin E synthase 3a (cytosolic).	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.500
LOC101161606	hspd1	ENSORLP00000030055	ENSORLP00000025853	Prostaglandin E synthase 3a (cytosolic).	Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.	0.530
LOC101161606	ppp5c	ENSORLP00000030055	ENSORLP00000001596	Prostaglandin E synthase 3a (cytosolic).	Serine/threonine-protein phosphatase.	0.920
LOC101161606	ptges3	ENSORLP00000030055	ENSORLP00000025953	Prostaglandin E synthase 3a (cytosolic).	Prostaglandin E synthase 3b (cytosolic).	0.901
LOC101161606	stip1	ENSORLP00000030055	ENSORLP00000013613	Prostaglandin E synthase 3a (cytosolic).	Stress-induced phosphoprotein 1.	0.967
LOC101161606	sugt1	ENSORLP00000030055	ENSORLP00000013907	Prostaglandin E synthase 3a (cytosolic).	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.	0.429
LOC101161606	trap1	ENSORLP00000030055	ENSORLP00000010499	Prostaglandin E synthase 3a (cytosolic).	TNF receptor-associated protein 1.	0.838
gfm1	hspa9	ENSORLP00000008145	ENSORLP00000013340	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.669
gfm1	hspd1	ENSORLP00000008145	ENSORLP00000025853	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]	Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.	0.826
gfm1	trap1	ENSORLP00000008145	ENSORLP00000010499	Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. Does not mediate the disassembly of ribosomes from messenger RNA at the termination of mito [...]	TNF receptor-associated protein 1.	0.839
hsp90b1	LOC101161606	ENSORLP00000005467	ENSORLP00000030055	Heat shock protein 90, beta (grp94), member 1.	Prostaglandin E synthase 3a (cytosolic).	0.714
hsp90b1	hspa9	ENSORLP00000005467	ENSORLP00000013340	Heat shock protein 90, beta (grp94), member 1.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.824
hsp90b1	hspd1	ENSORLP00000005467	ENSORLP00000025853	Heat shock protein 90, beta (grp94), member 1.	Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.	0.867
hsp90b1	ppp5c	ENSORLP00000005467	ENSORLP00000001596	Heat shock protein 90, beta (grp94), member 1.	Serine/threonine-protein phosphatase.	0.851
hsp90b1	ptges3	ENSORLP00000005467	ENSORLP00000025953	Heat shock protein 90, beta (grp94), member 1.	Prostaglandin E synthase 3b (cytosolic).	0.714
hsp90b1	stip1	ENSORLP00000005467	ENSORLP00000013613	Heat shock protein 90, beta (grp94), member 1.	Stress-induced phosphoprotein 1.	0.706
hsp90b1	sugt1	ENSORLP00000005467	ENSORLP00000013907	Heat shock protein 90, beta (grp94), member 1.	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.	0.855
hsp90b1	trap1	ENSORLP00000005467	ENSORLP00000010499	Heat shock protein 90, beta (grp94), member 1.	TNF receptor-associated protein 1.	0.958
hspa9	LOC101161606	ENSORLP00000013340	ENSORLP00000030055	Heat shock protein 9; Belongs to the heat shock protein 70 family.	Prostaglandin E synthase 3a (cytosolic).	0.500