Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101165000Si:dkey-12j5.1. (424 aa)    
Predicted Functional Partners:
rpl4
Ribosomal protein L4.
  
 
 0.907
LOC101165489
Triosephosphate isomerase; Triosephosphate isomerase is an extremely efficient metabolic enzyme that catalyzes the interconversion between dihydroxyacetone phosphate (DHAP) and D-glyceraldehyde-3-phosphate (G3P) in glycolysis and gluconeogenesis.
  
 0.870
tpi1
Triosephosphate isomerase.
  
 0.870
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.851
pgk1
Phosphoglycerate kinase.
  
 0.851
mycbpap
Uncharacterized protein.
  
 0.851
LOC101173617
Malate synthase-like.
     
 0.843
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
  
 0.814
LOC101167730
Glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.806
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.806
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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