STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165098Zgc:153115. (240 aa)    
Predicted Functional Partners:
LOC101164996
Fork-head domain-containing protein.
    
 0.796
LOC101168823
Cysteine-serine-rich nuclear protein 1b.
      
 0.785
LOC101160265
Cysteine-serine-rich nuclear protein 1a.
      
 0.785
LOC101173151
Calponin-homology (CH) domain-containing protein.
      
 0.783
mknk2
MAPK interacting serine/threonine kinase 2b; Belongs to the protein kinase superfamily.
   
  
 0.524
fgf3
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
    
 0.510
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
 0.505
kif15
Kinesin family member 15; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.501
hoxc4
Homeobox protein Hox-C4; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Deformed subfamily.
   
 
 0.496
GADD45B
Growth arrest and DNA damage inducible beta.
      
 0.487
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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