Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101172286Crystallin, gamma MX; Belongs to the beta/gamma-crystallin family. (205 aa)    
Predicted Functional Partners:
Ush2a
Uncharacterized protein.
      
 0.620
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
      
 0.535
LOC101157526
Lens intrinsic membrane protein 2.2.
      
 0.535
tas1r2
G_PROTEIN_RECEP_F3_4 domain-containing protein.
      
 0.534
cryaa
Alpha-crystallin A chain; May contribute to the transparency and refractive index of the lens; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.530
LOC100049402
Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.
   
    0.529
LOC101171460
Uncharacterized protein.
   
    0.529
lamb3
Uncharacterized protein.
      
 0.523
fyco1
FYVE and coiled-coil domain containing 1a.
      
 0.464
LOC101169800
Crystallin, alpha B, a; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.457
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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