STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ess2Ess-2 splicing factor homolog. (474 aa)    
Predicted Functional Partners:
dgcr2
DiGeorge syndrome critical region gene 2.
 
    
 0.737
prpf19
Pre-mRNA processing factor 19.
    
 
 0.608
xab2
XPA binding protein 2.
   
 
 0.581
LOC101163615
FRA10A associated CGG repeat 1.
    
 
 0.580
ppm1f
Protein phosphatase, Mg2+/Mn2+ dependent, 1F.
   
  
 0.570
rtf2
Replication termination factor 2.
      
 0.558
crnkl1
Crooked neck pre-mRNA splicing factor 1.
      
 0.558
ttc14
Tetratricopeptide repeat domain 14.
   
 
 0.512
trmt2a
tRNA methyltransferase 2 homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
  
 0.497
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
   
 
 0.494
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.