Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ess2Ess-2 splicing factor homolog. (474 aa)    
Predicted Functional Partners:
LOC101163615
FRA10A associated CGG repeat 1.
    
 
 0.963
prpf19
Pre-mRNA processing factor 19.
    
 
 0.935
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.927
bud31
BUD31 homolog.
    
 
 0.898
syf2
SYF2 pre-mRNA-splicing factor.
    
 
 0.896
xab2
XPA binding protein 2.
    
 
 0.881
ccdc130
Coiled-coil domain containing 130.
    
 
 0.875
gpatch1
G patch domain containing 1.
    
 
 0.873
dgcr2
DiGeorge syndrome critical region gene 2.
 
    
 0.858
prpf8
Pre-mRNA processing factor 8.
    
 
 0.852
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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