STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thoc5THO complex 5. (684 aa)    
Predicted Functional Partners:
thoc1
THO complex 1.
   
 0.999
thoc7
THO complex 7.
   
 0.998
thoc2
THO complex 2.
   
 0.996
thoc3
THO complex 3.
    
 0.996
ALYREF
Aly/REF export factor.
   
 0.994
thoc6
THO complex 6.
   
 0.994
nxf1
Zgc:153681.
    
 0.984
LOC101162819
Zinc finger CCCH-type containing 13.
   
 0.966
LOC101163463
Uncharacterized protein.
   
 0.953
DDX39A
Uncharacterized protein.
   
 0.953
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.