STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cgnl1Cingulin-like 1. (1300 aa)    
Predicted Functional Partners:
LOC101160233
Tight junction protein 1b; Belongs to the MAGUK family.
    
 0.927
LOC101166369
Tight junction protein 1a; Belongs to the MAGUK family.
    
 0.927
arhgef2
Rho/rac guanine nucleotide exchange factor (GEF) 2.
     
 0.926
LOC101161482
Uncharacterized protein.
  
  
 
0.905
uso1
USO1 vesicle transport factor.
   
 0.732
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.723
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.716
trappc8
Trafficking protein particle complex 8.
    
 0.715
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.690
trappc6b
Trafficking protein particle complex 6b.
    
 0.690
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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