STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162937Phosphatase and actin regulator 4a. (1122 aa)    
Predicted Functional Partners:
homer2
Homer scaffold protein 2.
    
   0.611
tbl2
Transducin (beta)-like 2.
      
 0.600
tmod3
Tropomodulin 2.
   
   0.600
slitrk6
SLIT and NTRK-like family, member 6.
      
 0.571
vax2
Ventral anterior homeobox 2.
      
 0.499
homer3
Homer scaffold protein 3b.
    
   0.485
plag1
Pleiomorphic adenoma gene 1.
    
 
 0.434
plagl2
Pleiomorphic adenoma gene-like 2.
    
 
 0.434
LOC101164388
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.401
LOC101170096
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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