STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ift20Intraflagellar transport 20 homolog (Chlamydomonas). (132 aa)    
Predicted Functional Partners:
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.999
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.999
ift88
Intraflagellar transport 88 homolog.
    
 0.997
ift172
Intraflagellar transport 172.
    
 0.995
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.992
trip11
Thyroid hormone receptor interactor 11.
   
 0.991
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.989
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
   
 0.989
ift74
Intraflagellar transport 74.
    
 0.987
ift81
Intraflagellar transport 81 homolog.
   
 0.986
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.