STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165595Zgc:109889. (553 aa)    
Predicted Functional Partners:
Brk1
BRICK1 subunit of SCAR/WAVE actin nucleating complex.
    
 0.977
LOC101164818
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
   
 0.971
LOC101169438
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
   
 0.970
nckap1
NCK-associated protein 1.
    
 0.962
LOC101159814
NCK associated protein 1 like.
    
 0.962
LOC101170217
Abl-interactor 1b.
   
 0.957
ABI1
Abl-interactor 1a.
   
 0.957
LOC101168921
Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.
    
 0.938
LOC101169609
BAI1-associated protein 2a.
    
 0.920
BAIAP2
BAI1 associated protein 2.
    
 0.920
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.