LOC101163183 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101163183

Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family. (373 aa)

Predicted Functional Partners:

penk

0.993

pdyn

0.979

LOC101168692

0.958

pomc

0.943

LOC101164777

0.943

gng2

0.923

GNG4

0.923

LOC101168199

0.901

LOC101175500

0.901

gnb4

0.901

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNG4	LOC101163183	ENSORLP00000043590	ENSORLP00000010609	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	0.923
GNG4	LOC101164777	ENSORLP00000043590	ENSORLP00000042460	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.860
GNG4	LOC101168199	ENSORLP00000043590	ENSORLP00000004503	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	WD_REPEATS_REGION domain-containing protein.	0.986
GNG4	LOC101168692	ENSORLP00000043590	ENSORLP00000042951	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Prepronociceptin a.	0.463
GNG4	LOC101175500	ENSORLP00000043590	ENSORLP00000009914	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.988
GNG4	gnb4	ENSORLP00000043590	ENSORLP00000029397	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.979
GNG4	gng2	ENSORLP00000043590	ENSORLP00000011120	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.901
GNG4	pdyn	ENSORLP00000043590	ENSORLP00000023482	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Prodynorphin.	0.502
GNG4	pomc	ENSORLP00000043590	ENSORLP00000032793	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Proopiomelanocortin.	0.860
LOC101163183	GNG4	ENSORLP00000010609	ENSORLP00000043590	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.923
LOC101163183	LOC101164777	ENSORLP00000010609	ENSORLP00000042460	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.943
LOC101163183	LOC101168199	ENSORLP00000010609	ENSORLP00000004503	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	WD_REPEATS_REGION domain-containing protein.	0.901
LOC101163183	LOC101168692	ENSORLP00000010609	ENSORLP00000042951	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	Prepronociceptin a.	0.958
LOC101163183	LOC101175500	ENSORLP00000010609	ENSORLP00000009914	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	Guanine nucleotide binding protein (G protein), beta polypeptide 2.	0.901
LOC101163183	gnb4	ENSORLP00000010609	ENSORLP00000029397	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	Guanine nucleotide binding protein (G protein), beta polypeptide 4b.	0.901
LOC101163183	gng2	ENSORLP00000010609	ENSORLP00000011120	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.923
LOC101163183	pdyn	ENSORLP00000010609	ENSORLP00000023482	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	Prodynorphin.	0.979
LOC101163183	penk	ENSORLP00000010609	ENSORLP00000026151	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.993
LOC101163183	pomc	ENSORLP00000010609	ENSORLP00000032793	Opioid receptor, delta 1a; Belongs to the G-protein coupled receptor 1 family.	Proopiomelanocortin.	0.943
LOC101164777	GNG4	ENSORLP00000042460	ENSORLP00000043590	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.860