STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173296Matrin-type domain-containing protein. (555 aa)    
Predicted Functional Partners:
LOC101165998
Dorsal root ganglia homeobox.
      
 0.761
ptpra
Receptor-type tyrosine-protein phosphatase alpha.
      
 0.605
dennd5a
DENN/MADD domain containing 5A.
   
  
 0.577
itfg1
Integrin alpha FG-GAP repeat containing 1.
      
 0.574
LOC101169310
DEAH (Asp-Glu-Ala-His) box polypeptide 32b.
      
 0.480
dhx32
DEAH (Asp-Glu-Ala-His) box polypeptide 32a.
      
 0.480
idh3b
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
   
  
 0.476
WDR1
WD repeat domain 1.
      
 0.464
Dmtf1
Cyclin D binding myb-like transcription factor 1.
      
 0.463
ALX3
ALX homeobox 3.
      
 0.462
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.