Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mybl1V-myb avian myeloblastosis viral oncogene homolog-like 1. (789 aa)    
Predicted Functional Partners:
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.980
lin37
Lin-37 DREAM MuvB core complex component.
    
 0.978
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.976
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.938
rbbp4
Retinoblastoma binding protein 4.
   
 0.754
LOC101156710
Retinoblastoma binding protein 4, like.
   
 0.754
rbl1
Retinoblastoma-like 1 (p107).
    
 0.732
foxm1
Fork-head domain-containing protein.
   
 0.701
ZNF830
Zinc finger protein 830.
      
 0.688
e2f4
E2F transcription factor 4.
   
 0.680
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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