STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mybl1V-myb avian myeloblastosis viral oncogene homolog-like 1. (789 aa)    
Predicted Functional Partners:
lin37
Lin-37 DREAM MuvB core complex component.
   
 0.777
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.772
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.766
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.688
rbbp4
Retinoblastoma binding protein 4.
   
 0.656
LOC101156710
Retinoblastoma binding protein 4, like.
   
 0.656
ENSORLP00000035554
Uncharacterized protein.
   
  
 0.565
atox1
Antioxidant 1 copper chaperone.
   
   0.561
cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
      
 0.558
LOC101155601
CCAAT enhancer binding protein beta.
    
 0.545
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.