STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
npm3Nucleophosmin/nucleoplasmin, 3. (159 aa)    
Predicted Functional Partners:
LOC101158550
Nucleophosmin 1a.
   
   0.895
ncl
Nucleolin.
    
 
 0.748
LOC101156769
Uncharacterized protein.
    
 
 0.748
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 
 0.727
nepro
DUF4477 domain-containing protein.
    
   0.724
tlx3
Homeobox domain-containing protein.
      
 0.721
tmem167a
Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.
      
 0.717
fbxw11
F-box and WD repeat domain containing 11a.
   
  
 0.660
fbxw4
F-box and WD repeat domain containing 4.
      
 0.657
recql4
RecQ helicase-like 4.
    
   0.657
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.