STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glipr2GLI pathogenesis-related 2, like; Belongs to the CRISP family. (156 aa)    
Predicted Functional Partners:
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
    
  0.815
LOC101158436
Transcription factor EB.
      
 0.601
LOC101166761
Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.
      
 0.587
LOC100049330
Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family.
      
 0.587
slc46a2
Solute carrier family 46 member 2.
      
 0.560
nudt2
Nudix (nucleoside diphosphate linked moiety X)-type motif 2.
  
  
 0.507
PLEKHG1
Pleckstrin homology and RhoGEF domain containing G1.
      
 0.507
prima1
Si:dkey-85n7.6.
      
 0.498
uvrag
UV radiation resistance associated gene.
      
 0.480
mgrn1
Mahogunin, ring finger 1b.
      
 0.480
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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