Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
synmSynemin, intermediate filament protein; Belongs to the intermediate filament family. (1012 aa)    
Predicted Functional Partners:
LOC101171927
Uncharacterized protein.
   
 0.745
LOC101164709
RNA binding protein, mRNA processing factor 2b.
    
 0.736
Unc79
Uncharacterized protein.
    
 0.683
grb2
Growth factor receptor-bound protein 2b.
    
  0.664
kank2
KN motif and ankyrin repeat domains 2.
   
 0.639
LOC101156036
Synaptopodin 2-like a.
  
 
 0.625
LOC101162931
Cardiomyopathy associated 5.
    
 0.583
akap6
A kinase (PRKA) anchor protein 6.
      
 0.558
SYNPO2
Synaptopodin 2.
   
 
 0.547
LOC105354227
Pyroglutamyl-peptidase I like.
    
 
 0.545
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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