STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
synmSynemin, intermediate filament protein; Belongs to the intermediate filament family. (1012 aa)    
Predicted Functional Partners:
Unc79
Uncharacterized protein.
    
 0.786
LOC101174131
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
0.601
zyx
Uncharacterized protein.
     
 0.566
LOC101160447
RAN binding protein 2.
    
 0.537
LOC101171927
Uncharacterized protein.
   
 0.505
vcl
Vinculin b.
     
 0.485
LOC101172101
Vinculin a.
     
 0.485
bicral
BRD4 interacting chromatin remodeling complex associated protein like.
  
 
   0.471
Tep1
Uncharacterized protein.
   
 0.468
ENSORLP00000040907
TROVE domain-containing protein.
   
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.