STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdxRibosomal protein S6 kinase. (783 aa)    
Predicted Functional Partners:
LOC101159747
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
   
0.968
LOC101162905
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
   
0.968
TSC2
TSC complex subunit 2.
    
 0.940
atf4
BZIP domain-containing protein.
    
 0.931
tsc1
TSC complex subunit 1b.
    
 0.926
ENSORLP00000031311
Uncharacterized protein.
    
 0.926
atf4-2
BZIP domain-containing protein.
    
 0.921
LOC101162204
TBC1 domain family, member 7.
     
 0.913
pkmyt1
Protein kinase, membrane associated tyrosine/threonine 1.
     
 
0.900
bub1
BUB1 mitotic checkpoint serine/threonine kinase.
     
  0.900
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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