STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157368Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (291 aa)    
Predicted Functional Partners:
LOC101170271
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
 0.997
ntrk1
Tyrosine-protein kinase receptor.
    
 0.977
ntrk3
Tyrosine-protein kinase receptor.
    
 0.933
ENSORLP00000027787
Neurotrophic tyrosine kinase, receptor, type 2b.
    
 0.933
LOC101168685
Tyrosine-protein kinase receptor.
    
 0.933
LOC101164147
Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.
  
  
 
0.902
LOC101166088
Nerve growth factor receptor b.
     
 0.902
LOC101163518
Neurotrophin receptor associated death domain.
     
  0.900
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
   
 0.895
ntrk2
Tyrosine-protein kinase receptor.
    
 0.819
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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