STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (469 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.992
abt1
Activator of basal transcription 1.
   
 
 0.977
nol6
Nucleolar protein 6.
   
 0.976
utp25
UTP25 small subunit processor component.
   
 
 0.968
wdr46
WD repeat domain 46.
   
 0.967
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
  
0.960
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
 0.958
H2MCJ8_ORYLA
Programmed cell death 11.
   
 0.954
bysl
Bystin-like.
   
 
 0.952
noc4l
Nucleolar complex associated 4 homolog.
   
 0.946
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.