STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slitrk2SLIT and NTRK-like family, member 2. (857 aa)    
Predicted Functional Partners:
LOC101169564
Protein tyrosine phosphatase receptor type Sa.
    
 0.960
LOC101174175
Protein tyrosine phosphatase receptor type Sa.
    
 0.960
ptprf
Protein tyrosine phosphatase receptor type Fa.
    
 0.626
PTPRD
Protein tyrosine phosphatase receptor type D.
    
 0.626
LOC101168742
Protein tyrosine phosphatase receptor type Fb.
    
 0.626
PTPRD-2
Uncharacterized protein.
    
 0.626
hars1
Histidyl-tRNA synthetase.
      
 0.597
LOC101172314
Uncharacterized protein.
   
 0.579
LOC101171037
Interleukin 1 receptor accessory protein-like 1a.
   
 0.579
LOC101156715
DDB1 and CUL4 associated factor 8.
      
 0.542
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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