Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)    
Predicted Functional Partners:
ubc
Ubiquitin B.
   
0.999
fau
40S ribosomal protein S30.
   
 0.999
rpl34
Ribosomal protein L34.
   
 0.998
rpl36
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.997
rpl28
Ribosomal protein L28.
   
 0.997
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 0.997
rps6
Ribosomal protein S6.
   
 0.997
rpl8
60S ribosomal protein L8.
   
 0.997
rpl24
Ribosomal protein L24.
   
 0.997
rps25
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.997
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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