STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufuSuppressor of fused homolog. (471 aa)    
Predicted Functional Partners:
gli3
GLI family zinc finger 3.
    
 0.986
gli2
GLI family zinc finger 2b.
    
 0.985
gli1
GLI family zinc finger 1.
    
 0.983
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
     
 0.973
CUL3
Cullin 3; Belongs to the cullin family.
     
 0.972
SPOP
Uncharacterized protein.
     
 0.937
spopl
Speckle type BTB/POZ protein like b.
     
 0.937
ulk4
Unc-51 like kinase 4.
    
 0.899
Stk36
Protein kinase domain-containing protein.
    
 0.899
smo
Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.
     
 0.896
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.