Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slitrk4SLIT and NTRK-like family, member 4. (862 aa)    
Predicted Functional Partners:
LOC101169564
Protein tyrosine phosphatase receptor type Sa.
    
  0.929
LOC101174175
Protein tyrosine phosphatase receptor type Sa.
    
  0.929
gbe1
Glucan (1,4-alpha-), branching enzyme 1b.
     
 0.755
htr1f
5-hydroxytryptamine (serotonin) receptor 1Fb.
      
 0.691
capn7
Calpain 7; Belongs to the peptidase C2 family.
    
 
 0.498
VMA21
Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family.
      
 0.490
LOC101174513
Protocadherin 12.
     
 0.481
lrr1
Zgc:77287.
      
 0.464
svopl
SVOP-like.
      
 0.463
cryzl1
Crystallin, zeta (quinone reductase)-like 1.
    
 
 0.425
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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