Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cwc15CWC15 spliceosome associated protein homolog. (289 aa)    
Predicted Functional Partners:
ctnnbl1
Catenin, beta like 1.
    
 0.999
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.999
prpf19
Pre-mRNA processing factor 19.
    
 0.998
plrg1
Pleiotropic regulator 1.
   
 0.998
bcas2
BCAS2 pre-mRNA processing factor.
   
 0.998
snw1
SNW domain containing 1.
   
 
 0.991
wbp11
WW domain binding protein 11.
   
 0.990
bud31
BUD31 homolog.
   
 
 0.954
prpf8
Pre-mRNA processing factor 8.
    
 
 0.953
rbm17
RNA binding motif protein 17.
   
   0.945
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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