STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbrg4Transforming growth factor beta regulator 4. (635 aa)    
Predicted Functional Partners:
ap4b1
AP complex subunit beta; Belongs to the adaptor complexes large subunit family.
   
 0.734
ap1g1
AP-1 complex subunit gamma.
    
 0.726
LOC101167321
AP-1 complex subunit gamma.
    
 0.726
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
   
 0.723
SLC49A3
Solute carrier family 49 member 3.
      
 0.701
dhx30
DEAH (Asp-Glu-Ala-His) box helicase 30.
   
  
 0.698
LOC101171688
AP complex subunit beta.
   
 0.681
ap1b1
AP complex subunit beta.
   
 0.681
psmg3
Proteasome (prosome, macropain) assembly chaperone 3.
   
  
 0.680
LOC101156047
Uncharacterized protein.
    
 
 0.662
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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